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89 results
2025
Newman M, Wakeley J, Fan W-T.
Conditional gene genealogies given the population pedigree for a diploid Moran model with selfing. Theoretical Population Biology. 2025;165:29-44.
Newman M, Wakeley J, Fan W-T.
Conditional gene genealogies given the population pedigree for a diploid Moran model with selfing. Theoretical Population Biology. 2025;165:29-44.
2024
Diamantidis D, Fan W-T, Birkner M, Wakeley J.
Bursts of coalescence within population pedigrees whenever big families occur. Genetics. 2024:iyae030.
Diamantidis D, Fan W-T, Birkner M, Wakeley J.
Bursts of coalescence within population pedigrees whenever big families occur. Genetics. 2024:iyae030.
Rivas-González I, Schierup M, Wakeley J, Hobolth A.
TRAILS: Tree reconstruction of ancestry using incomplete lineage sorting. PLOS Genetics. 2024;20(2):1-21.
Rivas-González I, Schierup M, Wakeley J, Hobolth A.
TRAILS: Tree reconstruction of ancestry using incomplete lineage sorting. PLOS Genetics. 2024;20(2):1-21.
Fan W-T, Wakeley J.
Latent mutations in the ancestries of alleles under selection. Theoretical Population Biology. 2024;158:20.
Fan W-T, Wakeley J.
Latent mutations in the ancestries of alleles under selection. Theoretical Population Biology. 2024;158:20.
2023
Wakeley J, Fan W-T, Koch E, Sunyaev S.
Recurrent mutation in the ancestry of a rare variant. Genetics. 2023;224:iyad049.
Wakeley J, Fan W-T, Koch E, Sunyaev S.
Recurrent mutation in the ancestry of a rare variant. Genetics. 2023;224:iyad049.
2022
McAvoy A, Wakeley J.
Evaluating the structure-coefficient theorem of evolutionary game theory. Proceedings of the National Academy of Sciences, USA. 2022;119:e2119656119.
McAvoy A, Wakeley J.
Evaluating the structure-coefficient theorem of evolutionary game theory. Proceedings of the National Academy of Sciences, USA. 2022;119:e2119656119.
2021
Salagnac O, Wakeley J.
The consequences of switching strategies in a two-player iterated survival game. Journal of Mathematical Biology. 2021;82:17.
Salagnac O, Wakeley J.
The consequences of switching strategies in a two-player iterated survival game. Journal of Mathematical Biology. 2021;82:17.
Harney É, Patterson N, Reich D, Wakeley J.
Assessing the performance of qpAdm: a statistical tool for studying population admixture. Genetics. 2021;iyaa045.
Harney É, Patterson N, Reich D, Wakeley J.
Assessing the performance of qpAdm: a statistical tool for studying population admixture. Genetics. 2021;iyaa045.
Wakeley J.
Coalescent models. In: Human Population Genomics, K. E. Lohmueller, R. Nielsen (eds.). Springer Nature Switzerland AG; 2021.
Wakeley J.
Coalescent models. In: Human Population Genomics, K. E. Lohmueller, R. Nielsen (eds.). Springer Nature Switzerland AG; 2021.
2020
Wakeley J.
Developments in coalescent theory from single loci to chromosomes. Theoretical Population Biology. 2020;133:56-64.
Wakeley J.
Developments in coalescent theory from single loci to chromosomes. Theoretical Population Biology. 2020;133:56-64.
2019
Wakeley J, Nowak M.
A two-player iterated survival game. Theoretical Population Biology. 2019;125:38–55.
Wakeley J, Nowak M.
A two-player iterated survival game. Theoretical Population Biology. 2019;125:38–55.
We describe an iterated game between two players, in which the payoff is to survive a number of steps. Expected payoffs are probabilities of survival. A key feature of the game is that individuals have to survive on their own if their partner dies. We...
Palacios JA, Veber A, Cappello L, Wang Z, Wakeley J, Ramachandra S.
Bayesian Estimation of Population Size Changes by Sampling Tajima’s Trees. Genetics. 2019;213:967-986.
Palacios JA, Veber A, Cappello L, Wang Z, Wakeley J, Ramachandra S.
Bayesian Estimation of Population Size Changes by Sampling Tajima’s Trees. Genetics. 2019;213:967-986.
The large state space of gene genealogies is a major hurdle for inference methods based on Kingman’s coalescent. Here, we present a new Bayesian approach for inferring past population sizes, which relies on a lower-resolution coalescent process that we...